Scaffold Ga0209382_10405263

Overview

Basic Information

• Taxon OID: 3300027909
• Scaffold ID: Ga0209382_10405263
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1518
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018465	Metagenome / Metatranscriptome	235	Y
F090935	Metagenome	108	Y
F102897	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209382_104052631	F090935	N/A	KLIVRKAPHAPVWSVWAVLEGTPSEEIFEGSSEEEASSWINTGGQAWLKGANAIRSGGAI
Ga0209382_104052632	F018465	GAG	MPRTSQLRTKSFSYHELMSGKISRIKLEALADAGKLNEETLARIGHVGRFYQRISNACPNSALKISDVLTGDQLQKIWNETAEVGVTTGQCPLVNAGK
Ga0209382_104052633	F102897	GAG	MTVGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLARTLLRELVDRET