Scaffold Ga0209382_10000404

Overview

Basic Information

• Taxon OID: 3300027909
• Scaffold ID: Ga0209382_10000404
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71120
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (67.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018210	Metagenome / Metatranscriptome	236	Y
F062916	Metagenome / Metatranscriptome	130	Y
F077493	Metagenome / Metatranscriptome	117	Y
F101514	Metagenome / Metatranscriptome	102	N
F104676	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209382_1000040416	F077493	AGGCGG	VTREDLVPQDITVDDTVPASIRPSIHGLVARLLPAYPHVRRVHVSFGESWVVTAWDGMGTSVADDELLAAIRRALSTAEHH
Ga0209382_1000040423	F104676	AGGA	MTAALFDARGCLTPQGFAQVSAAPPGKVPPELAAHLAGCPRCQRQLLAAALPSSGATRREPPPLWRTGVVVVACLLLVLVAMILTQMLGVPPR
Ga0209382_1000040437	F101514	GAGG	MKVGYRQAAWRLFQVTLTPLPKWPVRVTWADTELEGTPFQSTRLPLPVVRPKGTH
Ga0209382_1000040438	F062916	N/A	MPASSLSSAAVVLLGVIAVGSLVQAIFLLVLGRELMSMGRRLDAFQERLVRDLHPLVADITRATRDLAAASELTEQQARRLDGLVTTALTKLVEVERMVEEVLLPPASRIAGWLAALRSVRTVVDFYRGLRG
Ga0209382_1000040439	F018210	AGGAGG	MIARVLCYLRHHHNPVRHPLGGFKCADCGEAGADLEQMGFVDGGYVMPIRRVFSRDRGEFTRTGSWEPSAKGW