Scaffold Ga0209006_10011302

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10011302
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8085
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048424	Metagenome / Metatranscriptome	148	Y
F059437	Metagenome / Metatranscriptome	134	Y
F065202	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_100113023	F048424	GGTGG	MMLTEELEEVAKRTRVLRDRVLVKILPYVHPTLATPGIEINKGVVVAVGYGRRQRRKVAFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLWFEDGPESGAIIPMQVKPGDVIEFSFRNITLVDFDRVGFPGIGHLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNWMSGSEDWNRA
Ga0209006_100113025	F059437	GGCGG	MSVIGNKYLNGEPILPYANVKAYPATDIFMDFAFVDHTNTPVTPTSIAIEIDDITNSVVMAGPITLNPLGAVGTSGSPFTYPAFASTMYMQCLASMWNMTFPYIGSQKCQVGMQFTAIDSVTGQPFTGTGVIAIIELCALASVSGLAY
Ga0209006_100113029	F065202	GGAG	MPSKSPAQARLMRAAAHGWKKPGGGPSVAVGKEFMHADERKRAHKTKEGRADHKREMSDWAEGKTK