Scaffold Ga0209006_10004698

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10004698
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12373
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000522	Metagenome / Metatranscriptome	1055	Y
F070360	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_1000469811	F000522	AGGAGG	MDHNESVRKFEHLMLKQAGHAHDAATELEALVLLMPSEKSRQLAQLQVKASHKQSKEFRELAQQLKEN
Ga0209006_100046986	F070360	AGGAGG	MGSHPFPEISCVLCSKTLDLQVDLCADENGKAINEDSYVKRITTHQGVTSVTALSD