Scaffold Ga0209006_10004378

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10004378
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12824
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007590	Metagenome / Metatranscriptome	348	Y
F016391	Metagenome / Metatranscriptome	247	Y
F032724	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_1000437814	F007590	AGGA	MARFWMIALFLVLLCGCGGKPARMEHAEDPQGRYHEQIAAARRLLEQKEDWAERAEWEVLPVGDGWEVIAWRVEHPERKGSDRYLPWGYSEIELDGRMVTTHYHRRG
Ga0209006_100043785	F032724	N/A	LVKVDAAKKEKSEAALLDQATGQLLRAVKQKLRTKQGRVDFVKLRKEGYSERFLARLEDA
Ga0209006_100043786	F016391	N/A	MKDEILRYTGLAAAIHLAKSLGMTTREIARELSRGMLYMDALRLAKRAAPLLDIGVLEFMRLRKNQ