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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027908 Open in IMG/M |
| Scaffold ID | Ga0209006_10000004 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 259413 |
| Total Scaffold Genes | 239 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 180 (75.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000987 | Metagenome / Metatranscriptome | 813 | Y |
| F001114 | Metagenome / Metatranscriptome | 774 | Y |
| F004485 | Metagenome / Metatranscriptome | 436 | Y |
| F058932 | Metagenome / Metatranscriptome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209006_10000004166 | F058932 | AGGA | LNGDMRIAFVSHQRQWWRKQRLAAKYLKMRVEGVIYPDVYCLALMLADKFDFLLEDEKVPPGKYDLIMAELGASESQLRYVESLVAASNPPVAVIPGPPAILSRDLTDAKLRMVKHILSGARHVWAYSPELKTFCDGMIGRERAVVIPWPYDLAATQSLASSARRGSGRHKILVQAPMSFHDVVQNHSFVLKSVLLDVWQELPESLRETVSFHTFIYNSTDLEKYDSSEFARGLPFVREGKLGYRAFVRFLAGCDGVINLTAGSVLGRITFLAAALGRPGIFSDNSRLNLQLYPGSTVAMFDTVRLRELVGAMLRGLDGAGLSNSSVDRRLLPSDSAAAEIGDFTANRARMREIAAADLL |
| Ga0209006_10000004204 | F000987 | AGG | MSINEVSAEQLAELFHHYHQALGPDPGDTAEATLESWEQVSQQEKKRMVAAVRLAILEMASTAREREDARRYFATPGAAEWGC |
| Ga0209006_1000000482 | F004485 | GAGG | MTYHEQYTTGPASAAQLCRLWSAHVDSLERHLSANTWALAAVTVALIVYPIARIVIPAILHGIVPDAVRTVLTLI |
| Ga0209006_1000000499 | F001114 | AGGAG | VRLRRLLMSDQGSFVSADRFHPDPYTQSRNAERTLNAAIVQADISRSYEEYLEIFDEFYADDIEGSSETMMEPLRGKERVRSLLFGFLVPLHAMAEAGGVSISIRHTAIPGDAIDETHSAWTLELVGVPGKIRTVNWRILRKWSESRVVLEHHYDRQQSGEPLTGGHLRFGPPEPAKGFQMPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |