Scaffold Ga0209006_10000002

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10000002
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 303505
• Total Scaffold Genes: 266
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 193 (72.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003137	Metagenome / Metatranscriptome	505	Y
F005538	Metagenome / Metatranscriptome	397	Y
F023747	Metagenome / Metatranscriptome	209	Y
F032939	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_10000002137	F003137	GAG	MAGRKKKRKTFRAVTAVKEMARDRVGAPPAGKIVLEKKKKPEKYKTTLGKLLQDEV
Ga0209006_10000002159	F023747	AGGAGG	MKGVFAPRIAGTVLLALAASFAQNSSPGAIRWTEGAPNATSEVKNDAKIEGLKTDDVHIYVSLADLQETEYNRVWVQVSNPGKSPVDFDPQGAVLLNGDKSVRADVPDKAAKSVQRFGEAKAQELSSAHCTLMGSTTCQPTNAQMQMSKQVLAFSGQQAQWIRDHALKAKTIAPGEEEQGVIVFKKDKKSANYILRIPVGAQVFEFPLSAQNKAPSYD
Ga0209006_10000002261	F032939	AGGAG	MTIEIRDASLEARIQKQLQATGSSSVEEVLLRLLAT
Ga0209006_10000002265	F005538	AGGGGG	MDFQVHEQTYFLTLAEDDRRWRVFVSSPTGAWPIPVYEDATESGPLVVLQEEKHRIPN