Basic Information | |
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Taxon OID | 3300027908 Open in IMG/M |
Scaffold ID | Ga0209006_10000002 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 303505 |
Total Scaffold Genes | 266 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 193 (72.56%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003137 | Metagenome / Metatranscriptome | 505 | Y |
F005538 | Metagenome / Metatranscriptome | 397 | Y |
F023747 | Metagenome / Metatranscriptome | 209 | Y |
F032939 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209006_10000002137 | F003137 | GAG | MAGRKKKRKTFRAVTAVKEMARDRVGAPPAGKIVLEKKKKPEKYKTTLGKLLQDEV |
Ga0209006_10000002159 | F023747 | AGGAGG | MKGVFAPRIAGTVLLALAASFAQNSSPGAIRWTEGAPNATSEVKNDAKIEGLKTDDVHIYVSLADLQETEYNRVWVQVSNPGKSPVDFDPQGAVLLNGDKSVRADVPDKAAKSVQRFGEAKAQELSSAHCTLMGSTTCQPTNAQMQMSKQVLAFSGQQAQWIRDHALKAKTIAPGEEEQGVIVFKKDKKSANYILRIPVGAQVFEFPLSAQNKAPSYD |
Ga0209006_10000002261 | F032939 | AGGAG | MTIEIRDASLEARIQKQLQATGSSSVEEVLLRLLAT |
Ga0209006_10000002265 | F005538 | AGGGGG | MDFQVHEQTYFLTLAEDDRRWRVFVSSPTGAWPIPVYEDATESGPLVVLQEEKHRIPN |
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