Scaffold Ga0207428_10187286

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10187286
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012329	Metagenome	281	Y
F034885	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_101872862	F012329	AGGAG	MKMHLPLLLAAAFALCPLDGVAGEKQIVDVKELAGSWRGWVSEAAGDEWATMNVSADGRYKASTMSSTTLGKFYLQAGKLQYRSVRTTPAAMPSAAVLGTASVSEDQGKTVLTLMPEDPNYLGRAEFERVR
Ga0207428_101872863	F034885	N/A	MDAEAIRDLIRQKLHDGRLPRGSAPRAFGRPGNWQRCEACEGTMPKALHMMEVYALTNEKVIRFHGDCYTLWNEERRVLES