Scaffold Ga0209404_10240004

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10240004
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1138
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004850	Metagenome / Metatranscriptome	421	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F077194	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_102400041	F050305	N/A	NTTIDKVAMSEFGIHYYQLGDNEKQWCHDEMVNNPKWLKKDWEDPLWSVADKWEAGLPIYEEIIITYE
Ga0209404_102400042	F077194	N/A	MNNQTLTILDFGSGEVHQYHNINYDKYHMELDEFVSVQLGYNLNEVEYMFHTDSTIYNLTNELC
Ga0209404_102400043	F004850	N/A	MLDTYEFEIYYGDLEEPLYLTNDKNYICDDMRDFMEELGIDLKEVTYKVYNITN
Ga0209404_102400045	F009959	N/A	MTEQNVIDKVCDRMIITLYNELDYYMFEELGHTETNDKYVKEADRLARLII