Scaffold Ga0209404_10032842

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10032842
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2887
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100328422	F006867	AGGAG	MLYGKELVESIRRRCEIQPGMLVVSRAAGENEIPKVAVVMEVSPACEFNRDYEGAEGDIFYKCQPADGTPVFVDYAQNLREYS
Ga0209404_100328423	F105878	GAGG	MKVGQIIKLNPQGLKNFAPGIRQRLDGQIGLVVRQKYDLSYKLDQEKLPDRIRVYPSLVRFDELGDILGVDDNTVMVFPDQAEILS
Ga0209404_100328425	F021674	GAGG	MERETYNTRLKSNPENIPMGSLLRVKKHCRKNVTITQNGEYGLLVAPINNGKYITHDVLFPNGNRCIYLPLNWEVVSYAR
Ga0209404_100328426	F006383	GGAGG	MHDKMWKVQQPGTILRARHSGRRGQLALVLARASSGPRPSNGYPPTEYVKMQIVSTGERFEESLTNANNCWDIVSEP