Scaffold Ga0209404_10030312

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10030312
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3003
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023319	Metagenome	210	N
F024676	Metagenome	205	Y
F054940	Metagenome	139	Y
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100303122	F054940	N/A	MNLLKEEIKELIKERYYEYLEEGYESFEAMELAKKDIHETKEVEIDAYNKTYDGSFNID
Ga0209404_100303125	F024676	N/A	MYNKNNMYVIAMPYPNSIKLPDILEKDNGKVMYFKNQTDARNFLQNLYDERNINMEAFVDDTIEIMRVQ
Ga0209404_100303126	F095588	GAG	MKYKVEIELDFDRRPNKKDVLHRLFDVMKENKIDYKLHKYNNNLWSQIKRSIKNDKYK
Ga0209404_100303127	F023319	GGAG	MSRKIKCQRCKTNKAYPEDMENRASNLLLCDDCYTELRYLMADYLDIHIQEIKI