Scaffold Ga0209404_10029613

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10029613
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3035
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033839	Metagenome	176	N
F043451	Metagenome	156	N
F077401	Metagenome	117	N
F105000	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100296134	F043451	N/A	MTTIQPWIYPPNSSVDRVTYTPTLSAHILEYQEEMIDAKGNVYWKTVDSTTFGGSTSVKEFLEQMKDFYEKKSCRLDKML
Ga0209404_100296136	F033839	N/A	MNNLSPITRALLTVGIGVIIGIIPVLMIINTLSTTAIKFCGRYGSDYTIVDLDTPFGTIKRCVAKN
Ga0209404_100296137	F077401	N/A	MKTYWAWKHAINNTDKDKSDFTKILARDMNSAMNKAQKHYKHHMFNSNFNVSVMSGETDDRGYAKECEYSTGQWTRKAWSAYNYFHSLAPDMQERVYNHYRNLDAHWNDKSKAELQTIVGELSCTRN
Ga0209404_100296138	F105000	AGGAG	MHQELKSHGTEPVRYYNGFIMNKSFRDWLESCPKEYTWQMNQVTKNQGTYTFLLKEEED