Scaffold Ga0209404_10011835

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10011835
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4776
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N
F047122	Metagenome	150	Y
F087060	Metagenome	110	N
F088913	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100118351	F047122	AGGA	MKCPKCKKKAKASATKFIEYSHAQRRIRTCECGFKFTTYERIEADKQDLGQHSKQKKKEYYRKVLKELIDDLEGRTYLEKPKDSTIWEGV
Ga0209404_1001183512	F087060	N/A	MTQSRTTSNDISQKDTVSRLSGITKGKPVVTGATPQTKKFDPVADQNNRLMQMLDLSLAIKDKKSEYDGLRKSFENDLKAALDDNEENPKIRHSENDRVHVYLSKRRVYKYSDRLTAKRSKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG
Ga0209404_100118352	F088913	N/A	MTAPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYVSAKIRKGIVKEVTLKQNSCGAKIPHYQVLWDHQSSPSLVSQHRIELENEVSKM
Ga0209404_100118353	F006793	N/A	MRRWILPNAHTTNTKGIMTNTRSDNEQMEERVNYAADQLAKGKRAMDISKKLATKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVAKKRKKKYGDLDALDNSDIPF
Ga0209404_100118354	F016820	N/A	MNKKEFSYIVFSKSGDNIQEIVGVYKDLDGAAYGAKTALSTLFPNHGDKAEIIRCEIISTEEARITYEKTKPKDIFEKCEDGFCPMPTPQTQKVS
Ga0209404_100118355	F012584	N/A	MIKVPPYLPENTFILNEDTLPKDHDTDRFGKIMVFRKDIGWSVIPLADAVQYLSMKHTHWTFTPDTPYE
Ga0209404_100118356	F037769	GAGG	MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQIFNFTEEECNRLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLVNATALTPSDYKNQDDFQDALLHRLHLAEHFVSINKYIDEHIDFAKSYVPPQK