Scaffold Ga0209404_10004280

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10004280
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8226
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F049294	Metagenome / Metatranscriptome	147	Y
F083376	Metagenome / Metatranscriptome	113	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000428011	F019751	N/A	VSWKLDIVEAYRNVRNVSLTRTRGPELSKEFHDYIFNQWMFFSENAYGISEKINKSTELMSKFGKTSPAGVHYHIKQIEKDMENSISEDAMDTYIGEFMRARTGFEHDVADIQTMMTHEKEKGLEEMDKELYLKLARFRHEIKLDSFKMLQDSALPLQVKKLKMEREKLRPAKPIPEVIKTEGVSE
Ga0209404_100042802	F049294	AGCAG	MAGNLRYYALGAYTGLIALWSATGKIAIDETTSIALLAPIAILIGADYIKHKADVE
Ga0209404_100042803	F090244	N/A	VLTLRQTTFFYFFTSLLSNFIHFCKDVEARIFEKLDKIEERINDLCIRLTAMENEYNSHISDMEKKQDNKLKRRDYTLAIMAVGLTIIEVCRTLGII
Ga0209404_100042806	F083376	AGGAG	MIRIYTDPETTTTTESLDLGRVLLGETKKYTMYMKNTDTEWAVHNIKFENTNPELRFEYPQSMEANEVKELNIYWTPKLDSRKPLRTEFKYSGDIYIG