NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10001793

Scaffold Ga0209404_10001793


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10001793 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13961
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F021393Metagenome / Metatranscriptome219N
F031648Metagenome182Y
F049929Metagenome / Metatranscriptome146Y
F062151Metagenome / Metatranscriptome131Y
F081741Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_1000179312F031648N/AMPHKIMVEYNHNVKSFNADTTIKGNHGVIVSVYVSKTGSSGSKCVFKNGTTSSGTEEFTIFSEQQGSYVGINRRFEDGIFADITGNAEYTVVFK
Ga0209404_1000179313F001625N/AMAVTISTSDWTDANVRKTLSWQAALTSKLRVYKVTVTAGGSDAYATNGVSADLKEGRISTLVAVIPEYTDSLYKVEYDKANEKIKLFSVGGSAGAVFAEVANSTSIANKVFEFLVIGY
Ga0209404_1000179315F021393N/AMVEEINSETQVDTVEKSADTLVETEKSFQQTVKSGIDTLTEVVQSIAESQLASTQAIEGLATRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHTDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY
Ga0209404_1000179317F081741N/AILRFGCIMVEPLLVVVLATVSGAILNTIRGFLHSDEGYDIKKFFGAVIVSGFAGIAISQTIGLSGIDLLGLALIGLTAGFSVDYAVSKAKKVAE
Ga0209404_100017937F049929N/AMVIKSFEIDYNGTKETIEYETDIKYGEMESILSNSIDLSDVSKPKVNIPQYRMNILIKVLRKAPFPVGDTNAVRQLTQSQATEIMKEVMKDYPLAKYLGDWVETFTGSQINTDIDTQSTTSVQ
Ga0209404_100017939F062151AGGAGGMTSTSYTSADLLESILVDNWTSDNVPNVQKAWERRSVGFIDDRRDQIILTPKAENIKYFGLYGNDHWHDVTIDLDIRTYQNDERHADIVSEVIRIIKSKIRGGTDYTDLRVIASYTRNQYMRNMFNHIITISMRISESS

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