Scaffold Ga0209404_10001287

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10001287
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17290
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011529	Metagenome / Metatranscriptome	290	Y
F019486	Metagenome / Metatranscriptome	229	Y
F051448	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000128710	F051448	N/A	MFKPTLKNKLIDIDYEDKNVILAKYYNKKDKYGYPMHNGLTYIYTFDEYYKDWKVHAIIEFDFMSNGWWYGSNFFDSHEEIAKFWAENMFIPPREFISKEEKRQREIDSLINQHICEMSEGMHSLSHVGA
Ga0209404_1000128731	F019486	GGAG	MKSLKTIINEARPQDNHRWNAHDELATMNFIYKDFKKQLKRDPGKPYMDDDALVVGSDTVLIVKDNTSIADMKAAVAAWIGKNVKPEKGEAKVGRFNVKLPDELAGVLGNKATKLEKPRAIIKTDVDSAKEIQKAVKGLMKRGPEGKGVKFRMMKRKDHVAVYLDFDDGKIMQDAMKKIARIK
Ga0209404_100012877	F011529	GAGG	MRWAEATIEKRKLKGIRLRSARLWLDEKGFHPFLDQDELLRPDMQKSMCCAYDELPEEAWCLMDNYDRDKAKRSKYAT