NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209404_10000183

Scaffold Ga0209404_10000183


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10000183 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53662
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (17.19%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044224Metagenome / Metatranscriptome155Y
F046070Metagenome / Metatranscriptome152N
F048244Metagenome / Metatranscriptome148Y
F048320Metagenome148N
F056151Metagenome / Metatranscriptome138Y
F090610Metagenome / Metatranscriptome108N
F101084Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_1000018310F048244AGAAGMKSLKDILYQIKMKMNLEDKNMKVELTQKEIDRIYFDLKDYVKTLYYVDRLNELSESDKEECKIELNLIKKFSKL
Ga0209404_1000018316F044224N/AMKLNKIIQSYKNSNMNKELLSYKLKKYYNLNENERIIIKNSL
Ga0209404_1000018317F056151N/AMSNLKNLKTNHYKTKILNTKTLKLNKNKYIGFNINDLQNIKLKDKLEIENVIEFNLKGLTFININNIKKSTLQNI
Ga0209404_1000018320F048320N/AMRTLLATLLLILCYACGSIKGQAYIDINENIDYEANEDLRYRTRFKVGYKIYLGEKHTIKKKK
Ga0209404_100001835F046070N/AMDNFYWIIYNYNRIIMNLKRIKELRNVVHDAQTKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE
Ga0209404_100001836F090610AGAAGMHKVWRLYLINNKSITEISKELNITKNKLKLKYGLK
Ga0209404_100001837F101084N/AMNRDDLVYDFNDEMWNLYHEGTIDNEDDFYDQKNIWIDNQVIYTYECKKICDALDYDIFEEHDIFGKANNWSQAAYCAIYDLLNDHNDALDFNEMKIQEQEANA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.