Basic Information | |
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Taxon OID | 3300027906 Open in IMG/M |
Scaffold ID | Ga0209404_10000183 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 53662 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (17.19%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Tropical Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 15.249 | Long. (o) | -20.515 | Alt. (m) | Depth (m) | 55 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F044224 | Metagenome / Metatranscriptome | 155 | Y |
F046070 | Metagenome / Metatranscriptome | 152 | N |
F048244 | Metagenome / Metatranscriptome | 148 | Y |
F048320 | Metagenome | 148 | N |
F056151 | Metagenome / Metatranscriptome | 138 | Y |
F090610 | Metagenome / Metatranscriptome | 108 | N |
F101084 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209404_1000018310 | F048244 | AGAAG | MKSLKDILYQIKMKMNLEDKNMKVELTQKEIDRIYFDLKDYVKTLYYVDRLNELSESDKEECKIELNLIKKFSKL |
Ga0209404_1000018316 | F044224 | N/A | MKLNKIIQSYKNSNMNKELLSYKLKKYYNLNENERIIIKNSL |
Ga0209404_1000018317 | F056151 | N/A | MSNLKNLKTNHYKTKILNTKTLKLNKNKYIGFNINDLQNIKLKDKLEIENVIEFNLKGLTFININNIKKSTLQNI |
Ga0209404_1000018320 | F048320 | N/A | MRTLLATLLLILCYACGSIKGQAYIDINENIDYEANEDLRYRTRFKVGYKIYLGEKHTIKKKK |
Ga0209404_100001835 | F046070 | N/A | MDNFYWIIYNYNRIIMNLKRIKELRNVVHDAQTKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE |
Ga0209404_100001836 | F090610 | AGAAG | MHKVWRLYLINNKSITEISKELNITKNKLKLKYGLK |
Ga0209404_100001837 | F101084 | N/A | MNRDDLVYDFNDEMWNLYHEGTIDNEDDFYDQKNIWIDNQVIYTYECKKICDALDYDIFEEHDIFGKANNWSQAAYCAIYDLLNDHNDALDFNEMKIQEQEANA |
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