Scaffold Ga0209404

Basic Information
Taxon OID	3300027906 Open in IMG/M
Scaffold ID	Ga0209404_10000183 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027906 Open in IMG/M

Scaffold ID

Ga0209404_10000183 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53662
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (17.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

53662

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (17.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Tropical Atlantic Ocean

Coordinates

Lat. (^o)

15.249

Long. (^o)

-20.515

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F048320	Metagenome	148	N
F056151	Metagenome / Metatranscriptome	138	Y
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000018310	F048244	AGAAG	MKSLKDILYQIKMKMNLEDKNMKVELTQKEIDRIYFDLKDYVKTLYYVDRLNELSESDKEECKIELNLIKKFSKL
Ga0209404_1000018316	F044224	N/A	MKLNKIIQSYKNSNMNKELLSYKLKKYYNLNENERIIIKNSL
Ga0209404_1000018317	F056151	N/A	MSNLKNLKTNHYKTKILNTKTLKLNKNKYIGFNINDLQNIKLKDKLEIENVIEFNLKGLTFININNIKKSTLQNI
Ga0209404_1000018320	F048320	N/A	MRTLLATLLLILCYACGSIKGQAYIDINENIDYEANEDLRYRTRFKVGYKIYLGEKHTIKKKK
Ga0209404_100001835	F046070	N/A	MDNFYWIIYNYNRIIMNLKRIKELRNVVHDAQTKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE
Ga0209404_100001836	F090610	AGAAG	MHKVWRLYLINNKSITEISKELNITKNKLKLKYGLK
Ga0209404_100001837	F101084	N/A	MNRDDLVYDFNDEMWNLYHEGTIDNEDDFYDQKNIWIDNQVIYTYECKKICDALDYDIFEEHDIFGKANNWSQAAYCAIYDLLNDHNDALDFNEMKIQEQEANA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209404_10000183

Overview

Ecosystem & Geography

Associated Families

Sequences