Scaffold Ga0209404_10000170

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10000170
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55745
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (57.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041437	Metagenome / Metatranscriptome	160	Y
F062824	Metagenome / Metatranscriptome	130	Y
F101345	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000017022	F062824	N/A	MSRNKVIAYADANGKCRVVIPTMDCALSDEAVIAKDIPTSDYSVIDPANLPSNEFRSAWQYNHGSKTVTADLATAKTLTTEILETKFLATKKENADIQSIADMKGESASLKSNPSVPYTTITNATTISELEALI
Ga0209404_100001704	F101345	N/A	MGKEDEWIMRVVINVGRRTVLCVSSDGDEKLVECDEPQEFINVVEFCKTVLNPEDIFYEEIKVARA
Ga0209404_1000017042	F041437	GGA	MIPILLATSLTCSDAHILVDKMSKYKVEDEVKSEMIQIVKEETVGCWDAKAD