Scaffold Ga0209415_10172545

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10172545
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007640	Metagenome / Metatranscriptome	347	Y
F012143	Metagenome	283	Y
F086909	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_101725452	F086909	GGA	MSNRKTKSKGTVRVVKPRSRRYSSLTAREKATRERALALLSDLRRGEGSYSDLLRKHRLDTRTAHRHLGRDLPGGTRGEPLRPSKADRRARELMFPMSFGDVPVRTRSSLDATKLSEFFHDRDKLLHGKLSADAFEAKWRGVRVAGQELFADASAILGMADAGELKVENLYASTGSAR
Ga0209415_101725453	F007640	GGA	MIGRTARTVLRASRREVRPPRKVCPFCFEADHIGGRNHIPHVTVEECQLHHNWLTEERLAAGAEMDKQPHPIKEVEMALRSLAVTEDAMIAATSKHSEALKFLADQLKAFYEEQYGRQA
Ga0209415_101725454	F012143	AGGAG	MADKLDLYFRAHTIPVELRDEHRTDRNAKQPEDALIFHCLTTDDERQDLLFGACICAQLKDGRYVAKEIGLFHRDGHREELRVLNRFVAGSAVELGTVEEFRRKVFLKYLKAGALIAAYDAPFQISRIAVKWNKSLKKRRAFSFYFCMFRDKKTGKMRPSGFEPGLSIQSIDATKAIYRLLRYKFHTKDAEREEEEEQKISNVHVLDLKTLTSVLTGEVYTLPSACESFGVPASRPRKHYACVTKPALEFLLKTVASELELLNRLKEK