Scaffold Ga0209415_10006683

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209415_10006683

Scaffold Ga0209415_10006683

Overview

Basic Information
Taxon OID	3300027905 Open in IMG/M
Scaffold ID	Ga0209415_10006683 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20384
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033558	Metagenome	177	Y
F076361	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_1000668319	F076361	N/A	MDALVQGGATLESNAQMVNLLLSCSANDVVPAGYVAGSYYVCPSSGTEADFRPTVNSPVRDKGANLGAEYQYDLMGINQNLFGTRWEIGAYVYVPENFSANH
Ga0209415_100066834	F033558	AGG	MSENDSRTSPLVRLPLAQFIDRALEAERRSMEAEFRHRDGLQEAQLRAEDLRHAAGDAKIAKANEVLDYRLAEMNNFREQINRERTEYVRREMYDREHGALAERVKALEIIRGEQTGRTAAYASMVAFVLIVVQVVLHFWK

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