Scaffold Ga0209415_10006560

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10006560
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20626
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001567	Metagenome / Metatranscriptome	670	Y
F030197	Metagenome / Metatranscriptome	186	Y
F033396	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_100065603	F001567	N/A	MVRVADMQRSLIWIGGEAKGWACSNCRWKFPVPTLLSGEEAKGAYDRLAAAKFREHQCEAGASFFATEQETKLDAAAPFAVRARMLIKRGYTPKVAAELVLHEMEFEHGSDSRMMEKARAEAEDFLEKVRKGLI
Ga0209415_100065606	F033396	AGGAG	MEGLIELVDAFFARHGIECPAGNRHLTRPNTAQPTRPAEPALTTALPQHNYRKNSETDPRFDFLTLKP
Ga0209415_100065609	F030197	N/A	MGTFDPAGQEFLRISEHYRQMSDDELLVLIPQSSELTPFAQEALANEIRSRGLKAEVNDEKAGTSSQIKSLPAFFEHGSPKLRDSADYDSSNADSLQPDSSGEDEYDEDRKLVELCTVWSVRDALQVQSILDEAGIPFFMGPEKATGVDKVTSNFSNGVSVQIMQVGMPWARQAMQRYEPEDDPAPKENPELDEVVVRCPKCHSDEVVFEGRTSELANVRDESSQKFEWACDSCGNHWEDDGVEKEE