Basic Information | |
---|---|
Taxon OID | 3300027905 Open in IMG/M |
Scaffold ID | Ga0209415_10000340 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 85186 |
Total Scaffold Genes | 77 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (79.22%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006132 | Metagenome / Metatranscriptome | 380 | Y |
F037703 | Metagenome / Metatranscriptome | 167 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209415_100003404 | F006132 | AGGAGG | MKNWLFPVAGLALAGSMAVQAQTPAVPPANILDIETINIKPYLDGPYDKVASEYPALSEKLKDPTHVLGMEALTGTPRAIYLSGFDSLEALQKSEEWLLGDSATDAKVDALDAREALYISEVNHTLWHYRPDLSNNVAGADIPHSHYWEVIIFHMRSGRDGQFEELTKLHRDASLKIGQNTPWATYEGLMGSTNDYLVLVPMKSLKDADTGLAHKKDFGAALGDEGRGRMNKLSEESVASVEDNLWMVNPEWSYVEKSWIDADPQYWAPPEPSAKAAPKSAGGTAQKPKAPSLP |
Ga0209415_1000034051 | F037703 | GGA | MKPHPEMIEGPEAFDRFRAAMKAILTVPKSAMPPSPFKKWKPKKKRVEGSKKQS |
⦗Top⦘ |