Scaffold Ga0209488_10264787

Overview

Basic Information

• Taxon OID: 3300027903
• Scaffold ID: Ga0209488_10264787
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1287
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000803	Metagenome	883	Y
F045432	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209488_102647871	F000803	GAG	VTKTTLLAELEEFVGDHRSHGTLTCDATEPTWNGYLLTVACSCGVGFERWVTPEEADVAPAGAPSLDV
Ga0209488_102647873	F045432	GGTGG	MASGLAWGQATFRMLTTMPIVQRDRVWKSLTRRRGRVTLGSDGVGRRRVAFDDGILFVCLFVFVGLVVLGSVLMLLFRATATLPPSMLRSCPEFDLCGAPAGDGNESLWADDPRTDEPRMTP
Ga0209488_102647874	F000803	N/A	TDCPNTLLPVPLLPDLTDFLDSHHPHGSLTADATEPAWNGYLLTVACPCGVVLGRWVTPEDADLELFRLASLN