Scaffold Ga0209427_10452493

Overview

Basic Information

• Taxon OID: 3300027901
• Scaffold ID: Ga0209427_10452493
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 979
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024780	Metagenome / Metatranscriptome	204	Y
F075993	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209427_104524931	F075993	N/A	VANRRISEFPAISGIDVNEQDLLTLVHVFEVDPTLRNKKITFTEFRNYLDQYYVNITGEIIAGDITITGNLTVSGHTSLNTVTSTGLATFSGVVVQNTLSSTI
Ga0209427_104524933	F024780	N/A	MAYGIRKGLEDIASELRGIKNVLSSMWHSRYESGETDVLNPEAYADEYISTEECARRLSVSDQTLRNWMAIGRKTPEKGWVEGIHYVNASPNPS