Scaffold Ga0209427_10029874

Overview

Basic Information

• Taxon OID: 3300027901
• Scaffold ID: Ga0209427_10029874
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5504
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050736	Metagenome / Metatranscriptome	145	Y
F056130	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209427_100298742	F050736	GAGG	VPAPALSHVILTGALIGVIFMVQVFYFYVVDNVWVEMTQRELQELTDYVADTLANLYFLVNATNTNPMLTKALRLPLDVTGASYTLEVTYDQSNNAQTVKSALEVKSWVNSASWLPRGLKVDTAKTEIIEGSGKTVVAGCQRVASNIRVWIAYEG
Ga0209427_100298743	F056130	N/A	VKRLRTIPLFRNSKAASYTISAMIITAVTVALVVAAFAYAYQVLDRQRGQSEWEVAKKSILAFNDALETVAWKSAGATRSSRFTAQYGYLQLRPNDNNITLSATVNGVFQSLSNATYPGPTGVIKYALSTDYVTFDANYESWILGDSSSVITGSGSSYGRAVIRQQAGLVSMTLDYRVRAMRTSVININGTDTNYVDIWVIKLPMLISIPWSYVGEFDLQARTLNIRTASHSFTGVTNQTSVVRVQIGNEPASQVAIALTVPGSVVFNVILAEVQVTA