Scaffold Ga0209253_10076615

Overview

Basic Information

• Taxon OID: 3300027900
• Scaffold ID: Ga0209253_10076615
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2756
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F072259	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_100766151	F072259	GAG	MDELGIELYCYAISKGEYGRDYCNKHNINLSDFKLLTPYEHFLNAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGASNFDTVSPEMDKWETETGVCLFYNGMRSPNFQAPENEPSPFPFLMDRNKQREMLKLC
Ga0209253_100766152	F021128	AGG	MKLKNRNLSPVGGFYYKYEIKRDKLTFPAVVYGSTWSSLISNIQKDCRSNGIELPENLEQIVEDQICQRQPSNRCWYADGLGDNIAQAIHTVARVADKVLGTKLEHKARGCSSCNRRRNALNSLS