Scaffold Ga0209253_10018235

Overview

Basic Information

• Taxon OID: 3300027900
• Scaffold ID: Ga0209253_10018235
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5953
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_1001823510	F086624	N/A	MSEVKKESIGAWKNQTKDGKEVIKFSINGQRYNMWVNSYKDKPAQPDYKIYEDNYVAPTETKLANDDLEF
Ga0209253_1001823513	F025648	GGA	LQSGLIAKEDLPIIEAFKGDKLNLISPVTLRENLAYIFTLIGLTRLPDKIELEVIEDFIRSTYPFFTIQEMRIAFKIAVQGKFDCNIEHYEKFSPKYISGIMNAYKAKANQVRKNIPPPPEQPVKQLSDEEIVNFTKDDWLNGKRQDFNRIFNADKVFKILLKQGKLTFTQDQILETIRVVREDNLYRLNKMHPLDAKKFSQEIKKEDFIELQCKKLALVKYFEGFSG
Ga0209253_100182359	F032560	N/A	MQETYQDLEIGMQNLLPMERQMLLAKIYHYAWYNKEAYDQLITFVNHWEKHSEFKAVFFKQDSEESTNQI