Scaffold Ga0209253_10006395

Overview

Basic Information

• Taxon OID: 3300027900
• Scaffold ID: Ga0209253_10006395
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10205
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035312	Metagenome	172	Y
F063706	Metagenome	129	N
F089987	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_1000639511	F035312	N/A	VMGFNEVAFTVITILISGIGYFLKSLHSDLKSVMKEQKDIIETQGRLKGKIELVDNEARFKYEAIEKMTQLEIKHLAEQISELTQSVKKLIEINLR
Ga0209253_1000639514	F063706	N/A	MAKKVGRPKKVQVNIEGDKTDVIIQTNKAEIEYHKDGINKELDYDGKKVDVNIKKDETGTKVTVESENKFLKAVATLASKFVVKRFKKK
Ga0209253_100063952	F089987	N/A	MARYANNGIFNVKYPTRRKIQRILQQLISQAGAIDTGALYDSVRINAKIPALGELEIQIIAMYYFGFLNNGANLWNGGVIPPYEFCAQLTERMDSSGITTEIYSQYTEWMTQRYPILQVAQILGEKKSIIYTFEPIGGDFIGKLDFTD