Scaffold Ga0209668_10003983

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10003983
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6648
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F044466	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100039833	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQSFISPRPGYVQKDYNLCTTVTADNTEITADQTNVTADGWSEECYGSQSLTGTFQCALPYIGDNGQTFILMLISGKVWLYDCLQNNAQNLTVSPSLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRATDDEIKCGKIMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSVQAPTDRDTWKNLNYPIQAISLLTSGALGSRSAITVNGDVFYRAIDGIRSFIIARRSFSDWGNTPISGEMTPIVENDQTNLLWASSAVVFDNRVLMTSQPRFDSEGVIHKAISVLDMELVTSMRKKAPPAWSGIWTGLNILQLVKTENAYGDNCFAIARGSDGSIQIWEITKSNKFDSNLSDPRKEIEWQVQTRAYNFELPFGLKKLDSGDIFIDSLSGSAAFYVQYRPDQNPGWIEWADWTECAIVDQCLTGLCPLTNFQPQYRPKMRLPTPGDLACNESINTPARNLYEVQLSIAVSGYCRIKSIRVHAYDVQESPVGECRTYQGCKVLGGCDIDPFTYTSE
Ga0209668_100039835	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDARVYDYINQACRRLLHKGLWAGSYGRFTVTTVDGCITWPRSIETIEAVADCCGTGSVRNQWYEFQETGFGLLGKCNPCAGNQLVDRGTVVSYRDLSGGNNSYIRVYPGDASDNGKTITLQGYDANGQWIRTQSGGLWIDGEKLTLALPYVQSSKKFTALTGVIREATNTASRLYEFNQTIFAELDLAVYDPDETLPQYRRSLWTGRNSDCCTQTVTVIGKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0209668_100039837	F007361	GGA	MSVLFSLENDCIGLHEQGATDPDWKRSIEQYRMRYKYVADCSTYGYLPKAVVHDSIKVYVKKDAESSAKECSERFGYEVHLPSIQMLREYADQWASLHGVMTIEEGELFKLDTLRRIWIHCFHHERAFPEEKAARLITMNIQRHEPEKVFSIENGGRLLKEVF
Ga0209668_100039838	F044466	AGGAGG	MGVIAGLAGAALMIGGSAMSAGKKVRVPEFRRVNTEKEQEAAIKQNIASLQGGTELATKTTAAEQTLLESQLRRAIPGYDQLVSQAGKNIGASLRGEISQDVQSQLQRSSAGRALTGGFGGGTGMGRNLSARDFGLTSMQIQNQGLAQAQNFIQQQRAFGMVQPFSVSS