Scaffold Ga0209668_10001717

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10001717
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9484
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011825	Metagenome	286	Y
F050860	Metagenome	144	Y
F079586	Metagenome	115	Y
F089783	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1000171714	F050860	N/A	MQTDYSKLNDRIVKQAYEYSNLVLNEEMKIRLFQNKIRRAAEMIAARDTVYYQIED
Ga0209668_1000171718	F089783	AGTAG	MTVNQAKLVNAKASTGEVTVSGKGVKFSARTAKAESFAV
Ga0209668_1000171719	F011825	N/A	MEQNKKPVQQYYYSEEEWNRLGCGPLPKERKRDNFIGSHAKGNPKIDGKVVKGYN
Ga0209668_100017172	F079586	AGGAG	MKPRIDSRTSQVDTEKCVDQAGGRYDLVIATAQRLRELKRRGRETNTYVTPIDALLEMQAGQIDMIDYMAKVK