Scaffold Ga0209067_10074703

Overview

Basic Information

• Taxon OID: 3300027898
• Scaffold ID: Ga0209067_10074703
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1741
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004753	Metagenome / Metatranscriptome	425	Y
F010341	Metagenome / Metatranscriptome	305	Y
F012089	Metagenome / Metatranscriptome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209067_100747032	F004753	AGG	MNDQNDANEVRSPAQSEVNSDAREQIRDWEFLFWAFLLFGLARLAWLYLYRPANNAFHLGLSCGFVFCGVLGFLMRWVFSPKKGK
Ga0209067_100747033	F010341	GAGG	MADPFTVKPVYNALSQYVRNRADIGAGKAMLDGVLEAANPFDPKTARLPRRWFVLFSLLTAMVLGFFLYFNNLL
Ga0209067_100747034	F012089	N/A	NMDFAVDQAPVHLESVKPTAATAPAAVSPSITELLLAGKPIRLLPSKQRASKPVEVWISDLYEKDGRLLVRYTVCNHGTEPYTIDTPLVYQLDGVRSAQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMASSTQPTVLRFQFPSSKQSEDGLSNGPQTQIAAFLVR