Basic Information | |
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Taxon OID | 3300027898 Open in IMG/M |
Scaffold ID | Ga0209067_10074703 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1741 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
Source Dataset Sampling Location | ||||||||
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Location Name | Pennsylvania, USA | |||||||
Coordinates | Lat. (o) | 41.1289 | Long. (o) | -78.4195 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004753 | Metagenome / Metatranscriptome | 425 | Y |
F010341 | Metagenome / Metatranscriptome | 305 | Y |
F012089 | Metagenome / Metatranscriptome | 284 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209067_100747032 | F004753 | AGG | MNDQNDANEVRSPAQSEVNSDAREQIRDWEFLFWAFLLFGLARLAWLYLYRPANNAFHLGLSCGFVFCGVLGFLMRWVFSPKKGK |
Ga0209067_100747033 | F010341 | GAGG | MADPFTVKPVYNALSQYVRNRADIGAGKAMLDGVLEAANPFDPKTARLPRRWFVLFSLLTAMVLGFFLYFNNLL |
Ga0209067_100747034 | F012089 | N/A | NMDFAVDQAPVHLESVKPTAATAPAAVSPSITELLLAGKPIRLLPSKQRASKPVEVWISDLYEKDGRLLVRYTVCNHGTEPYTIDTPLVYQLDGVRSAQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMASSTQPTVLRFQFPSSKQSEDGLSNGPQTQIAAFLVR |
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