Scaffold Ga0209067_10016748

Overview

Basic Information

• Taxon OID: 3300027898
• Scaffold ID: Ga0209067_10016748
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3793
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005654	Metagenome / Metatranscriptome	394	Y
F045437	Metagenome / Metatranscriptome	153	Y
F092540	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209067_100167482	F005654	GGA	MSEESLLNRLRHRAGEKAANPAQYTAKDFQLEVLSQLAEVQTLAESMEKNWLDELKSLRDQRLLKFDSRTLVALGAVVLSVAAYVIQDARNSARQDTEIETTRARVTRLEQIAATNTEGRIRTEAQLQELRDGQGEIKALIQAHDSASRKVHPDK
Ga0209067_100167483	F045437	GGAGG	VQARIEDGHAELRIIDRRFERDVLEKLSRLEAKMDTLVGNGQPGRMTMAENRIVELERNDVRRTVIERFVNAGIAVLVSVAVALHEHWWK
Ga0209067_100167484	F092540	AGGAGG	MSTASTTIISNLKSTAVPTGNTSKAANAAGIDMNGMLALAASKALELKACLALIAHATDGADPNLVTLNNILASLV