Scaffold Ga0209777_10343095

Overview

Basic Information

• Taxon OID: 3300027896
• Scaffold ID: Ga0209777_10343095
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1140
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus globerulus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036080	Metagenome / Metatranscriptome	170	Y
F051683	Metagenome	143	Y
F058556	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_103430952	F036080	AGAAGG	MNPKVDLESAIMVAWQTSEDIDLLYKHHGDHPVPMTEDDVANALWGIKVLHDMRMEKLMDTYCRKMELDQYCTDPVKLAARNDIFKKGKKK
Ga0209777_103430953	F051683	GGAG	MILELDDDFTDEITAANLAQSYVGISDMLKSGSEWHEDDIVAWKELLPAIKLVGNWYSINFDKEIKKAKKAKK
Ga0209777_103430955	F058556	GGA	MTTFIVEHLVKGHPMFDTVQGVEDIDLTMFKDIQTLWVCDTPDEIDAVESELRRKHARPS