NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209777_10022645

Scaffold Ga0209777_10022645


Overview

Basic Information
Taxon OID3300027896 Open in IMG/M
Scaffold IDGa0209777_10022645 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6158
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019267Metagenome / Metatranscriptome230Y
F022798Metagenome212Y
F023263Metagenome210Y
F048047Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209777_100226452F048047GAGMSNNGIAKAEDFKRALERANIERVVLPASGLTVLLCRPPVFASLAMGRAGTLLQARITDAKPEEIRTEDIEAFTQWLTETLTRLFVQPRFSAAPEADEVGLAEILLDDLKFIFRWLRGEVFSTGDREQGTGDRDQTPVTCNLSPVTSTEDLGRFPSGQRAASVSGGSGEAELLPSERTPGAHRHAGIPAGLHRG
Ga0209777_100226455F022798GGAMSYTTITQVAGMFPTFTRNGPKGPSDTLIQTFIDDVAGEIDAILQRRFQEAYASLGFTAWQGAFSTDQVNLLEKVNRYGACAQLAEVFETSGIAAAARVAKGFEDEFRELCNKLNARDVDGKPLAQGGDYDYLFDPFAKVETPRAQLGGVAGGDQYPRETSSEDSTNVFKKWDRREF
Ga0209777_100226456F019267AGGAGMAASATCTTLYSFREERRRLYRRVRVDITGLASGANTIAHGIKKRENPAAGAPLIEEDLQPTSSVVVHQTQPGDATNLYYTVDSGAGTTVSIFVTV
Ga0209777_100226459F023263N/AAKFDANVRALRGTVMSLPVTNPTTESDFYMGLPTGANVQPVGVLAQDVVEPGYPVTSELWLDPSSGNPVNGTVPPSPFVSQGRAWGLITLAPEAEVIAADTTIQADDLVYVADAYGRVTSIRNGSVGTMYYCVGRAKYPSTAINQRIRISVTLQQVKL

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