Scaffold Ga0209624_10418444

Overview

Basic Information

• Taxon OID: 3300027895
• Scaffold ID: Ga0209624_10418444
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 893
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045252	Metagenome / Metatranscriptome	153	Y
F055119	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_104184441	F055119	N/A	QMQQATGLSQRGLTSMSPILPISFLVTLLCAFGAVEGALFQQLMFVGAALSAAILVCSFEAWSAREIPVRSDDETRLRSHSDP
Ga0209624_104184442	F045252	GGA	VRPQFGEYGEQRQVLPSLGHTMSPILPISFVATLLCVLVAIDWALYQQILFVGAALSATVWVCSLEAWSCQEAPAKSEDERGPY