NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10233520

Scaffold Ga0209624_10233520


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10233520 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004122Metagenome / Metatranscriptome452Y
F032010Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0209624_102335201F004122N/AMTENGLSDSGCRSAELRYEWHSFLGLLPVLDLQPTDPVLYQRCLTAVWLSRKSAISRTDLQRAAGLAFQEETLDFDLLVAQLVREGILEPIVSSPFHFQIRRRNWTNPESAYAADDRLSLSAISRQEQTARFRMLGLLDARILNPRLPEKRVQQIRKERDELERIYEATWLELENAISSKAAEAIRKSVEETTEAGAVQLDL
Ga0209624_102335202F032010AGGMNSVVDTMVAAPASSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLIGSNVRVGDELLAPASAGTAIADTEIYIRKPSLRRADVYQVKAGYAALPKMDKREEPFVRVQVAEGQLGINAIHIPCPVIRDYFFAANRRASWPSQPTFYYVLRLPQDVTYKELRLAYRLRRMELQKQNASKAEF
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