Scaffold Ga0209624_10012538

Overview

Basic Information

• Taxon OID: 3300027895
• Scaffold ID: Ga0209624_10012538
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5434
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001128	Metagenome / Metatranscriptome	769	Y
F012080	Metagenome / Metatranscriptome	284	Y
F025102	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_100125383	F025102	AGGAG	MNKTAEIVLLALALAGMYCAIPKNSSPIDNSRTGAQQIVVVADGSDPMPLCRGKGCR
Ga0209624_100125385	F001128	AGG	MRATEKQARTGANQSPEEGQIITFRSLNGLSEGIVKEVRWGLVWRDFILYDGRVIPEHKLLDHPEPPVWRKAEEVTQDEREAWERRLVSMAEEGLDPRDQEQSFWAELNQYLAYTYLRFKQAGLKPPDPA
Ga0209624_100125386	F012080	GGAG	VTRPDEESEKERVWRVLSEAGLIDIPPDEFAERIKEAKHVVMGRLSELLEQTTDIQEREAAAYSLATLKELERTVSRGGRRISD