NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10000147

Scaffold Ga0209624_10000147


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10000147 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64303
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (76.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001177Metagenome / Metatranscriptome756Y
F010670Metagenome / Metatranscriptome300Y
F011009Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_1000014737F001177GGAGGMAIKRPTKSRGTPSHKPVASAPLRHVDVRAPQQMVPGEVYVGWLCKNRSCGRVIAIAPTAPGGKALTDFDDQLTAIKCPHCQDENLYRWSARSEQNYSPKSVST
Ga0209624_1000014751F011009AGGAGMNTFSSKLSAVAATLLINGLVMGAVGYLFELQSHPHMSAFAFARELAAHQWFI
Ga0209624_1000014767F010670GGAGGMKKVGIIVLAAVTVMQSALTVAGDKSTDSNPKPSSFVPHPHTNSHVYGAPIQPAIVGHSKTSHHKHTPKKRSSSPKE

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