Scaffold Ga0209624_10000136

Overview

Basic Information

• Taxon OID: 3300027895
• Scaffold ID: Ga0209624_10000136
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66777
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (60.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F004412	Metagenome / Metatranscriptome	439	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_100001364	F000208	GAG	MAMRIRVTMRADLFEERKQQHIERGYRIEDERPTPVNGLCSFIAASEIADSGGVGDLVAQALNGMAR
Ga0209624_100001365	F002560	AGGAGG	MVEHNPPSSADSPRPPVIPLPVALYVSGELIFELYDGGQPSRRFAIRWERFVPEKESEPEAAAQSSQADLRTHQD
Ga0209624_100001369	F004412	AGGA	MENGPSNSEQSLSPEEAAAKAAILAACNRLAEAGITFVAVHFDGSGDEGVNEDIKCYATEDYAYEETEVHDANFSNLQEHFETLVPYGYEDGCGGFGDVILNVKTRKITVERNDRFEDYTTSTYEV