Scaffold Ga0209624_10000106

Overview

Basic Information

• Taxon OID: 3300027895
• Scaffold ID: Ga0209624_10000106
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78678
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (76.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007759	Metagenome / Metatranscriptome	345	Y
F016010	Metagenome / Metatranscriptome	250	N
F102872	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_1000010645	F102872	N/A	MHRHGLFSKLLLGVAALVVALPLFWLAGGINWLDTKVFPPRRPKDMPQNAVWLDAPALPISWHHGWWFGCDLAPSGTANYCRLVTANGAEVYAGEYLPCESKVPLPVSTKELAPPHNVEMWISDKRLKTLAPVGALENGDLLLPVEVLDRCDKFKQSGH
Ga0209624_1000010649	F007759	N/A	MKRALFLLLAISTLAAARDKKPKAHPGPYVFTSKASAQTLKVLIVQENLGQGYTLDSDHQFQFRFSMPGQLPFMDSMATIIGICKGMTTRKVWSYSLAELNGTTTIIVQPVWEYPDEDCQMQTRQFIWSQPEEIAAFQAMLDKAPASSAQVPSATPVVASPATAPPSTPTSATDQQQSMKQHAACVEFAKDNASVTCK
Ga0209624_1000010657	F016010	GGAGG	MNKHRVQLIRERFYPLVRFSRPQSAGEVEIEGVRATVHLGELSLRLWPVESSHNGILSHEQLGDVVSPHLLVHNLLSSVPASMQCLSSHLDRIEAADGVTVSLLPYYLEDSAAAVVDGMALGRILGPRIGETAQ