Scaffold Ga0209624

Basic Information
Taxon OID	3300027895 Open in IMG/M
Scaffold ID	Ga0209624_10000048 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027895 Open in IMG/M

Scaffold ID

Ga0209624_10000048 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	114111
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (78.35%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

114111

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (78.35%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F004287	Metagenome / Metatranscriptome	445	Y
F011314	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_1000004861	F002623	N/A	MLIRPYTDADLSALRRMHAAQGFNYAFPELSHPLFLSKIVVEDDAGHAVMASLARLTCEIYLLMDPASGTPRDRFTRIAALQRAGESDLRARGLEDAHAWLPPSIASRFGRRIERLGWQCDDHWTPYCRRFV
Ga0209624_1000004871	F004287	AGGAGG	LKSPVSNSTTTIARVPEPPYESSPPQRDPATVTIANIGDQDFYISRTYGIFHIPASAKGEPYSLLLITARGDALDLGDNRRFPFTITAREIAEDLIQNLVVHGVFVCAGARPTESEVAAASARRQSWYQDLVSEADAMWARGHSYREISDMHRRAALSLGIERDWAFVPHQLMDCPACGEKVKPHVALCKHCGAVLDEEKAAKHNVGGRKARQSE
Ga0209624_1000004872	F001450	N/A	MIRVIRETHDTPSAVAEVLARAGGRNRFGEPNFRVVWGWSRLSWIGGRWTDHDAHGNIIRSTIELRRVPKYLPFDRWHIERWIAPEIYGSPKIWHAATLEREDGILVSVLGPYPSRGEYEHCFTLAGKGGEFISLDPAACAKIARAIEWARRQPHARSRRALDTRESLRERESDSRIDEVLDDDAPAFHSQPFVTIAGR
Ga0209624_1000004883	F011314	AGGAGG	MSVSKKTLGYAVQLGGAGAVIVGAVLSFHHIAIGASLLGGAAAFYVGEKIRAIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209624_10000048

Overview

Ecosystem & Geography

Associated Families

Sequences