Basic Information | |
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Taxon OID | 3300027894 Open in IMG/M |
Scaffold ID | Ga0209068_10006336 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5583 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
Source Dataset Sampling Location | ||||||||
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Location Name | Pennsylvania, USA | |||||||
Coordinates | Lat. (o) | 41.1289 | Long. (o) | -78.4195 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005312 | Metagenome / Metatranscriptome | 405 | Y |
F009363 | Metagenome / Metatranscriptome | 319 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209068_100063363 | F005312 | N/A | MARYSDYLGRRIVVTYRAADIILPATGNMAADSGKSIFLEESYKQQGRVKTFRWEIPYACIVDLNEVPEIPRPSASVSGPQETSEEAARQPATLEFNKRTA |
Ga0209068_100063365 | F009363 | GGAGG | VAVRICPHCKTEISAPISVARSNDMECPKCGARLEVASGSRTISTLCGLAAGAIVWKLSAGSTSDLGGVLPTLYAFLVFGMVSPLVLMFTASLRNAPALPASLPAHDSSSAGHGAGGHGGGHH |
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