Scaffold Ga0209550_10166156

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10166156
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014848	Metagenome / Metatranscriptome	259	Y
F031871	Metagenome / Metatranscriptome	181	Y
F071983	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_101661561	F071983	N/A	KGSVTVNKAVLERWRKHKSRARNENRMWALYVYLKTGGLDMTWTHTVIDVIRGRKEAYAYERELVKMIEPELNDQYL
Ga0209550_101661564	F031871	AGGAG	MKVNHTLYIYKADKRTKTGERLLSTTVWQNRDAAEMAREVRELQYDTWPVSQGYRIEFVPTMKTVTNLMSGVEISIPHDTPRSCDPSSELYWSM
Ga0209550_101661566	F014848	AGGAG	MTRYYDTLAEFERDGYDIIVDKSWEDLDPKDLFDDSVSDIKQIYEDINSGNLDWFMLRVRVLVEGLELAEEFLGGCLYKDASEILSDGTAEDIIDQAMSRAKSQVYRLSRKFTELSYAVD