NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209550_10146203

Scaffold Ga0209550_10146203


Overview

Basic Information
Taxon OID3300027892 Open in IMG/M
Scaffold IDGa0209550_10146203 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1690
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015600Metagenome / Metatranscriptome253Y
F020171Metagenome / Metatranscriptome225Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209550_101462031F020171AGGMAEQFVDTVAEHITGAMQQEIAEHLYEQWHNKNLDEGSHYAEREFMEFASDELKVQYNNYYGLSSGDEDFYEVTD
Ga0209550_101462032F021288GAGGMLGYTQRDLADMTYGVYQADLLINADENPAIHNYLVTAHDFLQGLWAEGYFDNGDV
Ga0209550_101462034F015600GGAMETDTTILPPHLQKMIDAGVSGTDVLHGELKNLMLIAEQEFQEIATEEEEGGYSDAMLSMDRTRAEGRLDAFAEVYALTYQLAFAINERTKARESR

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