Scaffold Ga0209550_10034244

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10034244
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4272
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034177	Metagenome / Metatranscriptome	175	Y
F039511	Metagenome / Metatranscriptome	163	Y
F040097	Metagenome / Metatranscriptome	162	Y
F043386	Metagenome / Metatranscriptome	156	Y
F072320	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_1003424411	F039511	GAG	MKQELKALDLKIKALRDVMEWYQIFQQDDEVGLALAEVEAELEKFKFK
Ga0209550_100342442	F040097	GAG	MKKEAKVEFGIEIVKPWSTAMYDHNEALADVVKAKVHALWVAAYDAAEAEFVDEDDLGNEFADMQWDGASSEMVEIQKAITYYSYSNQSIGEVAEEVETALEDMPLYQLKELVEELDIKLDTGFVGFN
Ga0209550_100342443	F034177	GAG	MIQQQIEAIEARLEFLKTDTTKWVSAFAQPNGCTPYDHGNYFRKLERNRLKTKLKSLQKKLLKN
Ga0209550_100342445	F043386	GAG	MTHKEFKLTVKNEILEDAGYERKAVHYRIGDVVTVDEVTFDTLQAGSIIQRYTQEGWFTFDKYDFENEVAVTTITVDYSIRKLGQRKQK
Ga0209550_100342447	F072320	N/A	MNALSTTQIRAEIVELINGGMLNVPAIIKFFKDFRPGANPTTVKTEAKELVAEVKAIIKRGY