Scaffold Ga0209550_10019432

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209550_10019432

Scaffold Ga0209550_10019432

Overview

Basic Information
Taxon OID	3300027892 Open in IMG/M
Scaffold ID	Ga0209550_10019432 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5966
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090314	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_100194323	F090314	N/A	MDSMTAMELQENSFIDLRTLITNCNLIRLQLLDGSSRELTAPTLGRDFVAGNLEDEKTLGVFRRSILRSVQFETQNSVATGALEYTRKAIGEILVSRQIPALAQVSYLEPRDHPQQLRIVEISRGFLFTDFLQNPAIPIAALGSIELRV

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