Scaffold Ga0209628_10021598

Overview

Basic Information

• Taxon OID: 3300027891
• Scaffold ID: Ga0209628_10021598
• Source Dataset Name: Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5672
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002335	Metagenome	569	Y
F003173	Metagenome	503	Y
F026033	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209628_100215982	F026033	N/A	VLDTISDLVGKVEKRARKSWITQEMISTVDERRKWKDVNTEEGRMNYRKLRNELKRATERAKKEYHENTCTEIMEFHRTGRYDLMYMKTKELGWKEIQGIQHTGIEDSQGNRIVDQRQVLKIWENYVSELYDRFNRPETLEIEPEEVGTGEKGPYILQSEVEKAIKEMWNRKPTGDDYVPGDELKLLGEGGLKIFKKLISIIYENGEWPKDFTEVK
Ga0209628_100215985	F003173	GGA	MEMKVEKTKLMIISRQLSPVTIMIDQKQLENVELLKYFGSILTNDGRCTCEIKSKIVMAKAAFNKKKTLFCQ
Ga0209628_100215986	F002335	GGA	VVLEKDGEDQLNHHVRNEEVLLRVNEQRNVLHEIRKRKANWIGHNLSRNCLLKQVIEGRIKGEMEVTRRRGRRRKKLLDDLKDRRG