Scaffold Ga0209496_10634586

Overview

Basic Information

• Taxon OID: 3300027890
• Scaffold ID: Ga0209496_10634586
• Source Dataset Name: Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 580
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location

• Location Name: Old Woman Creek National Estuarine Research Reserve, Ohio, USA
• Coordinates
  • Lat. (^o): 41.224
  • Long. (^o): -82.304
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002989	Metagenome / Metatranscriptome	515	Y
F062881	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209496_106345861	F062881	N/A	VTYMTTTTTTNLLHQIAQIQLMERGKLSPYTIKDRALPVSPYYKLQAWENGKNVTRYIRAEQVPLVEEALANYAKFQDLVGQYAQGVIDQTREQLAAVGVKKKPGRRPTSCWRRSRKSSN
Ga0209496_106345862	F002989	AGGA	MTRFQTQVPTGSLVQELELLVRTAIFKPANALVGHLLQAAADRIDAAYQPRPGQVYKGREACQVQGLFGCFP