Scaffold Ga0209380_10000318

Overview

Basic Information

• Taxon OID: 3300027889
• Scaffold ID: Ga0209380_10000318
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33655
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006863	Metagenome / Metatranscriptome	363	Y
F013239	Metagenome / Metatranscriptome	273	Y
F090650	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209380_1000031826	F006863	GGAG	MAIKRPSKSRGTPSRKPVTSVAVRHVDLTSKPQMVPGNRYVGWLCKNRSCGALIAVAIPPAGSKAAVPEFADQLTALKCPHCGDEDLYRWSARSEHEYTPKSAGS
Ga0209380_1000031828	F013239	N/A	MRNSLAVTSIALIALHGPVNAEPLRACEQVSVLVVGAARPLLANLAESRPDTPPFVAQFRACLSSHSICSVVYNSRFGKEALVMGEVTADLPAQYLSEQSKSSVILLVRSIPRVRNDSNQYCLVSEKLAGAASVQQWDVYGWVIAPNTRQALPLQRQVLGDKAVSDPGSLRALAAALWFFAERMSGQPPP
Ga0209380_100003187	F090650	GGTGG	MIARYSQFVFAAPVAAAAFLVACSTAGNYRNDAAHKDLLQTLRQCLVEVPISGEKNKEFVSPCVGQDVSSLNGISRGRLIDALGPARFCISQTETSFPEKADCPADQNPLWSFYRLADSIVMGGGPELVCVANNHPYCVTVEWRRSQ