Scaffold Ga0209635_10004562

Overview

Basic Information

• Taxon OID: 3300027888
• Scaffold ID: Ga0209635_10004562
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10886
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049073	Metagenome / Metatranscriptome	147	Y
F088166	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209635_1000456212	F088166	AGGAG	MFEKIAEIINERVGDGFTGEDYDRGWHDAIKGLAERLSDHFRSENPFFDRQVFLKACGFDAKRYWRAVPYNDQTELANRFAVATIVDTNGDIIADVFSREAATLIEMAPELKEKLSEYERADHG
Ga0209635_100045626	F049073	N/A	MNEQMKRQIVFALDDDNEVMTAALDRTSDLDEENKQLNRLLIKRHEAILAKLDKSEPLTQDDLRLVRDANEIHLNDEDNLNGHHKQTVKLNQWLQEQIELTKEQAMRILEEYLDRDSHTPAKVYRALHTLWEEATPNDIVGEPAFDDEGKCLKCASKVSFADVTDTVVFVGDDIVKRYDGDITNRNCVRCTYPNQYPEYEDCDAEQ